Abstract: FSSP (families of structurally similar proteins) is a database of structural alignments of proteins in the Protein Data Bank. (PDB) (1). The current release. PDF | FSSP (families of structurally similar proteins) is a database of structural alignments of proteins in the Protein Data Bank (PDB). The database currently. FSSP (families of structurally similar proteins) is a database of structural alignments of proteins in the Protein Data Bank (PDB) . The database currently .
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The FSSP database of structurally aligned protein fold families. FSSP entries are parsed on the fly to display structural neighbours of individual proteins in the form of structure alignments laid out horizontally, multiple structure alignments known structures combined with multiple sequence alignments [sequences homologous to a known structure: Related articles in PubMed Rooting of eucalypt cuttings as a problem-solving oriented model in plant biology.
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The FSSP database: fold classification based on structure-structure alignment of proteins.
Database of homology-derived protein structures and the structural meaning of sequence alignment. Database of homology-derived protein structures and the structural meaning of sequence alignment. In this example, 31 PDB chains clustered into the sequence family represented by bovine pancreatic trypsin inhibitor 9PTI have been extracted from the table. National Center for Biotechnology InformationU. Identification and classification of protein fold families.
Academic redistribution of single files or of the entire database is permitted. Citations Publications citing this paper.
The results of the exhaustive pairwise structure comparisons are reported in the form of a fold tree generated by hierachical clustering and as a series of structurally representative sets of folds at varying levels of uniqueness. From This Paper Figures, tables, and topics from this paper.
Searching protein structure databases dztabase come of age. A multiple sequence alignment of four protein families: More information on the Dali server 10 is available on the WWW at: The index can be used for searching by protein name or PDB code.
Form and Content of the Database.
Families of Structurally Similar Proteins database – Wikipedia
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However, protein families are known to retain the shape of the fold even when sequences have diverged below the limit of detection of significant similarities at the sequence level. ArthurRoland L. This set includes many pairs of remote homologs that have completely superimposable 3-D structures despite low sequence similarity rssp pairs with recurrent common folding motifs.
Overview of protein fold space. Close mobile search navigation Article navigation. This reduces the number of unique folds to consider for structural analysis, depending on the threshold chosen.
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The FSSP database: fold classification based on structure-structure alignment of proteins
Databasw Discussed in This Paper. Tertiary structural constraints on protein evolutionary diversity: Unique features of the globin amino acid sequences. The current database contains at most one alignment per pair of full length proteins. Views Read Edit View history. If an internal link led you here, you may wish to change the link to point directly to the intended article.
The FSSP database contains a fold classification based on exhaustive structural alignments dataabase known structures. Searching protein structure databases has come of age. Gender-related differences in cue-elicited cravings in Internet gaming disorder: Showing of 10 references.
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The sets of representative folds contain a maximal number of protein folds where no pair is allowed databaze have a larger fraction of structurally equivalent residues than a given threshold percentage.